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Title: | Phylogenetic and full-length genome mutation analysis of SARS-CoV-2 in Indonesia prior to COVID-19 vaccination program in 2021 |
Authors: | Nidom, Reviany V. |
Participants: | Indrasari, Setyarina Normalina, Irine Nidom, Astria N. Afifah, Balqis Dewi, Lestari Putra, Andra K. Ansori, Arif N. M. Kusala, Muhammad K. J. Alamudi, Mohammad Y. Nidom, Chairul A. |
Issue Date: | 2021 |
Series/Report no.: | Bulletin of the National Research Centre, Volume 44 (2021), Article number: 200 |
Abstract: | All data of the isolates were extracted from the Global Initiative on Sharing All Influenza Data (GISAID) EpiCoV database. CoVsurver platform was employed to investigate the full-length genome mutation analysis of all isolates. This study also focused on the phylogeny analysis in unlocking the mutation of S protein in Indonesian SARS-CoV-2 isolates. WIV04 isolate that was originated from Wuhan, China was used as the virus reference according to the CoVsurver default. The result showed that a full-length genome mutation analysis of 166 Indonesian SARS-CoV-2 isolates was successfully generated. Every single mutation in S protein was described and then visualized by utilizing BioRender platform. Furthermore, it also found that D614G mutation appeared in 103 Indonesian SARS-CoV-2 isolates. |
URI: | http://tailieuso.tlu.edu.vn/handle/DHTL/12439 |
Source: | https://link.springer.com/article/10.1186/s42269-021-00657-0 |
ISSN: | 2522-8307 |
Appears in Collections: | Tài liệu mở |
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